Rotate: A command-line program to rotate circular DNA sequences to start at a given position or string [version 1; peer review: 2 approved]
Sequences derived from circular DNA molecules (i.e.most bacterial, viral and plastid genomes) are expected to be linearised and rotated to a common start position for most downstream analyses including alignment.Despite this being a common and straightforward task, available software is either limited to a small number of input sequences, lacks the